Publications in Yadong Liu Group

GFHunter enables accurate and efficient gene fusion detection in long-read cancer transcriptomes. bioRxiv 2025. 链接

cuteFC: regenotyping structural variants through an accurate and efficient force-calling method. Genome Biology 2025. 链接
A comprehensive genetic variant reference for the Chinese population. Science Bulletin 2024. 链接
Comprehensive evaluation of haplotype phasing tools with different strategies across diverse sequence technologies. BIBM 2024. 链接
Comprehensive Benchmarking of Genotype Imputation Tools Using a Large-Scale Chinese Reference Panel. BIBM 2024. 链接
TDLM: A Diffusion Language Model for TCR Sequence Exploration and Generation. BIBM 2024. 链接
miniSNV: accurate and fast single nucleotide variant calling from nanopore sequencing data. Briefings in Bioinformatics 2024. 链接
MEHunter: transformer-based mobile element variant detection from long reads. Bioinformatics 2024. 链接
HapKled: a haplotype-aware structural variant calling approach for Oxford nanopore sequencing data. Front. Genet. 2024. 链接

Kled: an ultra-fast and sensitive structural variant detection tool for long-read sequencing data. Briefings in Bioinformatics 2024. 链接
A telomere-to-telomere genome assembly of Zhonghuang 13, a widely-grown soybean variety from the original center of Glycine max. The Crop Journal 2024. 链接
Comprehensive evaluation of RNA-seq alignment methods based on long-read sequencing data. BIBM 2023. 链接

StackCirRNAPred: computational classification of long circRNA from other lncRNA based on stacking strategy. BMC Bioinformatics 2022. 链接
Comparison of the Nanopore and PacBio sequencing technologies for DNA 5-methylcytosine detection. BIBM 2022. 链接

Long-read sequencing settings for efficient structural variation detection based on comprehensive evaluation. BMC Bioinformatics 2021. 链接
SKSV: ultrafast structural variation detection from circular consensus sequencing reads. Bioinformatics 2021. 链接
Psi-Caller: A Lightweight Short Read-Based Variant Caller With High Speed and Accuracy. Front. Cell Dev. Biol 2021. 链接

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band. Bioinformatics 2020. 链接
Long-read-based human genomic structural variation detection with cuteSV. Genome Biology 2020. 链接

deSALT: fast and accurate long transcriptomic read alignment with de Bruijn graph-based index. Genome Biology 2019. 链接

A neurodynamic approach to convex optimization problems with general constraint. Neural Networks 2016. 链接